Module io.scif
Package io.scif.formats

Class ICSFormat.Metadata

    • Constructor Detail

      • Metadata

        public Metadata()

    • Method Detail

      • populateImageMetadata

        public void populateImageMetadata()
        Description copied from interface: Metadata
        Generates format-agnostic image metadata structures based on this instance's format-specific metadata.

      • close

        public void close​(boolean fileOnly)
           throws IOException
        Description copied from interface: HasSource
        Closes the image source(s) associated with this component, with a toggle to determine if the component itself is reset.
        Specified by:
        close in interface HasSource
        Overrides:
        close in class AbstractMetadata
        Parameters:
        fileOnly - - If true, only the associated source(s) are closed.
        Throws:
        IOException

      • storedRGB

        public boolean storedRGB()

      • setStoredRGB

        public void setStoredRGB​(boolean rgb)

      • get

        public String get​(String key)
        Convenience method to directly access the hashtable.

      • hasInstrumentData

        public boolean hasInstrumentData()

      • setHasInstrumentData

        public void setHasInstrumentData​(boolean hasInstrumentData)

      • isVersionTwo

        public boolean isVersionTwo()

      • setVersionTwo

        public void setVersionTwo​(boolean versionTwo)

      • setKeyValPairs

        public void setKeyValPairs​(Map<String,​String> keyValPairs)

      • putDate

        public void putDate​(String value)

      • putDescription

        public void putDescription​(String value)

      • putMicroscopeModel

        public void putMicroscopeModel​(String value)

      • putMicroscopeManufacturer

        public void putMicroscopeManufacturer​(String value)

      • putExperimentType

        public void putExperimentType​(String value)

      • putLifetime

        public void putLifetime​(boolean lifetime)

      • putPixelSizes

        public void putPixelSizes​(Double[] pixelSizes)

      • putUnits

        public void putUnits​(String[] units)

      • putAxes

        public void putAxes​(String[] axes)

      • putAxesSizes

        public void putAxesSizes​(double[] axesSizes)

      • putPhysicalPixelSizes

        public void putPhysicalPixelSizes​(double[] physSizes)

      • putTimestamps

        public void putTimestamps​(Double[] timeStamp)

      • putChannelNames

        public void putChannelNames​(Map<Integer,​String> cNames)

      • putEMWaves

        public void putEMWaves​(Integer[] emWaves)

      • putEMSingleton

        public void putEMSingleton​(Integer[] em)

      • putEXWaves

        public void putEXWaves​(Integer[] exWaves)

      • putEXSingleton

        public void putEXSingleton​(Integer[] ex)

      • putByteOrder

        public void putByteOrder​(String byteOrder)

      • putRepFormat

        public void putRepFormat​(String repFormat)

      • putCompression

        public void putCompression​(String cmp)

      • putSigned

        public void putSigned​(boolean signed)

      • putLaserManufacturer

        public void putLaserManufacturer​(String laserMan)

      • putLaserModel

        public void putLaserModel​(String laserMod)

      • putLaserRepetitionRate

        public void putLaserRepetitionRate​(Double laserRep)

      • putLaserPower

        public void putLaserPower​(Double laserPower)

      • putDichroicModel

        public void putDichroicModel​(String diModel)

      • putExcitationModel

        public void putExcitationModel​(String exModel)

      • putEmissionModel

        public void putEmissionModel​(String emModel)

      • putFilterSetModel

        public void putFilterSetModel​(String fltrModel)

      • putObjectiveModel

        public void putObjectiveModel​(String objModel)

      • putImmersion

        public void putImmersion​(String immersion)

      • putLensNA

        public void putLensNA​(Double lensNA)

      • putWorkingDistance

        public void putWorkingDistance​(Double wd)

      • putMagnification

        public void putMagnification​(Double mag)

      • putDetectorManufacturer

        public void putDetectorManufacturer​(String detMan)

      • putDetectorModel

        public void putDetectorModel​(String detModel)

      • putBitsPerPixel

        public void putBitsPerPixel​(Integer bpp)

      • putAuthorLastName

        public void putAuthorLastName​(String lastName)

      • putStagePositions

        public void putStagePositions​(Double[] positions)

      • putStageX

        public void putStageX​(Double stageX)

      • putStageY

        public void putStageY​(Double stageY)

      • putStageZ

        public void putStageZ​(Double stageZ)

      • putExposureTime

        public void putExposureTime​(Double expTime)

      • getDate

        public String getDate()

      • getDescription

        public String getDescription()

      • getMicroscopeModel

        public String getMicroscopeModel()

      • getMicroscopeManufacturer

        public String getMicroscopeManufacturer()

      • getLifetime

        public boolean getLifetime()

      • getParameterLabels

        public String[] getParameterLabels()

      • getHistoryLabels

        public String[] getHistoryLabels()

      • getExperimentType

        public String getExperimentType()

      • getParameterScales

        public Double[] getParameterScales()

      • getParameterUnits

        public String[] getParameterUnits()

      • getAxes

        public String[] getAxes()

      • getAxesSizes

        public int[] getAxesSizes()

      • getHistoryExtents

        public Double[] getHistoryExtents()

      • getHistoryUnits

        public String[] getHistoryUnits()

      • getTimestamps

        public Double[] getTimestamps()

      • addStepChannel

        public void addStepChannel​(Map<Integer,​String> channelNames)

      • addCubeChannel

        public void addCubeChannel​(Map<Integer,​String> channelNames)

      • getEMWaves

        public Integer[] getEMWaves()

      • getEMSingleton

        public Integer[] getEMSingleton()

      • getEXWaves

        public Integer[] getEXWaves()

      • getEXSingleton

        public Integer[] getEXSingleton()

      • addLaserWavelength

        public void addLaserWavelength​(Map<Integer,​Integer> wavelengths)

      • getByteOrder

        public String getByteOrder()

      • getRepFormat

        public String getRepFormat()

      • getCompression

        public String getCompression()

      • isSigned

        public boolean isSigned()

      • getLaserManufacturer

        public String getLaserManufacturer()

      • getLaserModel

        public String getLaserModel()

      • getLaserRepetitionRate

        public Double getLaserRepetitionRate()

      • getLaserPower

        public Double getLaserPower()

      • getDichroicModel

        public String getDichroicModel()

      • getExcitationModel

        public String getExcitationModel()

      • getEmissionModel

        public String getEmissionModel()

      • getFilterSetModel

        public String getFilterSetModel()

      • getObjectiveModel

        public String getObjectiveModel()

      • getImmersion

        public String getImmersion()

      • getLensNA

        public Double getLensNA()

      • getWorkingDistance

        public Double getWorkingDistance()

      • getMagnification

        public Double getMagnification()

      • getDetectorManufacturer

        public String getDetectorManufacturer()

      • getDetectorModel

        public String getDetectorModel()

      • getBitsPerPixel

        public Integer getBitsPerPixel()

      • getAuthorLastName

        public String getAuthorLastName()

      • getStagePositions

        public Double[] getStagePositions()

      • getStageX

        public Double getStageX()

      • getStageY

        public Double getStageY()

      • getStageZ

        public Double getStageZ()

      • getExposureTime

        public Double getExposureTime()