FlowCyto (LOCI Javadocs 0-SNAPSHOT API)

java.lang.Object
- loci.apps.flow.FlowCyto

```
public class FlowCyto
extends Object
```

Constructor Summary

Constructors
Constructor and Description

FlowCyto()

Constructors
Constructor and Description
`FlowCyto()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static void`	`calcTrialRatio(double thresholdMin, int sizeMin, double gaussianSigma)`
`static void`	`closeAllWindows()`
`static void`	`createDebugTimeCheckPoint(String message)`
`static void`	`createDebugTimeStartPoint(String message)`
`static boolean`	`foundParticle(boolean isIntensityImage, boolean excludeOnEdge, double thresholdMin, int sizeMin, float compareTOLow, float compareTOHigh, double gaussianSigma)`
`static void`	`garbageCollect()`
`static boolean`	`getRatioBoolean(boolean excludeOnEdge, double thresholdMin, int sizeMin, float compareTOLow, float compareTOHigh, double gaussianSigma, boolean compareUsingMeanIntensity)`
`static void`	`init(String mode, int width, int height, double pixelsPerMicron)`
`static void`	`logInImageJ(String message)`
`static void`	`main(String[] args)`
`static void`	`openFile(String filename, double pixelsPerMicron)`
`static void`	`showImage(String mode, int width, int height, byte[] imageData)`
`static void`	`startImageJ()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- FlowCyto
```
public FlowCyto()
```

Method Detail

main

public static void main(String[] args)

startImageJ
```
public static void startImageJ()
```

closeAllWindows
```
public static void closeAllWindows()
```

openFile

public static void openFile(String filename,
                            double pixelsPerMicron)
                     throws IOException

Throws:: IOException

garbageCollect
```
public static void garbageCollect()
```

logInImageJ

public static void logInImageJ(String message)

createDebugTimeStartPoint

public static void createDebugTimeStartPoint(String message)

createDebugTimeCheckPoint

public static void createDebugTimeCheckPoint(String message)

init

public static void init(String mode,
                        int width,
                        int height,
                        double pixelsPerMicron)

showImage

public static void showImage(String mode,
                             int width,
                             int height,
                             byte[] imageData)

foundParticle

public static boolean foundParticle(boolean isIntensityImage,
                                    boolean excludeOnEdge,
                                    double thresholdMin,
                                    int sizeMin,
                                    float compareTOLow,
                                    float compareTOHigh,
                                    double gaussianSigma)

getRatioBoolean

public static boolean getRatioBoolean(boolean excludeOnEdge,
                                      double thresholdMin,
                                      int sizeMin,
                                      float compareTOLow,
                                      float compareTOHigh,
                                      double gaussianSigma,
                                      boolean compareUsingMeanIntensity)

calcTrialRatio

public static void calcTrialRatio(double thresholdMin,
                                  int sizeMin,
                                  double gaussianSigma)

Class FlowCyto

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

FlowCyto

Method Detail

main

startImageJ

closeAllWindows

openFile

garbageCollect

logInImageJ

createDebugTimeStartPoint

createDebugTimeCheckPoint

init

showImage

foundParticle

getRatioBoolean

calcTrialRatio