FourierTransform (ImgLib2 Javadocs 0-SNAPSHOT API)

java.lang.Object
- net.imglib2.algorithm.fft.FourierTransform<T,S>

Type Parameters:

T - - the intput, RealType

S - - the ouput, ComplexType

All Implemented Interfaces:

Algorithm, Benchmark, MultiThreaded, OutputAlgorithm<Img<S>>

Deprecated.
use FFT instead
```
@Deprecated
public class FourierTransform<T extends RealType<T>,S extends ComplexType<S>>
extends Object
implements MultiThreaded, OutputAlgorithm<Img<S>>, Benchmark
```
Computes the Fourier Transform of a given RandomAccessibleInterval or Img.

Author:

Stephan Preibisch

Nested Class Summary

Nested Classes
Modifier and Type	Class and Description
`static class`	`FourierTransform.FFTOptimization` Deprecated.
`static class`	`FourierTransform.PreProcessing` Deprecated.
`static class`	`FourierTransform.Rearrangement` Deprecated.

Constructor Summary

Constructors
Constructor and Description
`FourierTransform(Img<T> input, S complexType)` Deprecated.
`FourierTransform(Img<T> input, S complexType, FourierTransform.FFTOptimization fftOptimization)` Deprecated.
`FourierTransform(Img<T> input, S complexType, FourierTransform.PreProcessing preProcessing)` Deprecated.
`FourierTransform(Img<T> input, S complexType, FourierTransform.Rearrangement rearrangement)` Deprecated.
`FourierTransform(Img<T> input, S complexType, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, FourierTransform.FFTOptimization fftOptimization)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, FourierTransform.PreProcessing preProcessing)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, FourierTransform.PreProcessing preProcessing, FourierTransform.Rearrangement rearrangement, FourierTransform.FFTOptimization fftOptimization, float relativeImageExtension, float relativeFadeOutDistance, int minExtension)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, FourierTransform.Rearrangement rearrangement)` Deprecated.
`FourierTransform(RandomAccessibleInterval<T> input, ImgFactory<S> imgFactory, S complexType, OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.

Method Summary

All Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method and Description
`boolean`	`checkInput()` Deprecated.
`OutOfBoundsFactory<T,RandomAccessibleInterval<T>>`	`getCustomOutOfBoundsStrategy()` Deprecated.
`String`	`getErrorMessage()` Deprecated.
`protected int[]`	`getExtendedImageSize(RandomAccessibleInterval<?> input, int[] imageExtension)` Deprecated.
`int[]`	`getExtendedSize()` Deprecated.
`FourierTransform.FFTOptimization`	`getFFOptimization()` Deprecated.
`int[]`	`getFFTInputOffset()` Deprecated.
`int[]`	`getFFTInputSize()` Deprecated.
`int[]`	`getImageExtension()` Deprecated.
`T`	`getImageType()` Deprecated.
`int`	`getMinExtension()` Deprecated.
`int`	`getNumThreads()` Deprecated. The number of threads used by the algorithm
`int[]`	`getOriginalOffset()` Deprecated.
`int[]`	`getOriginalSize()` Deprecated.
`FourierTransform.PreProcessing`	`getPreProcessing()` Deprecated.
`long`	`getProcessingTime()` Deprecated.
`FourierTransform.Rearrangement`	`getRearrangement()` Deprecated.
`float`	`getRelativeFadeOutDistance()` Deprecated.
`float`	`getRelativeImageExtension()` Deprecated.
`Img<S>`	`getResult()` Deprecated.
`protected int[]`	`getZeroPaddingSize(int[] imageSize, FourierTransform.FFTOptimization fftOptimization)` Deprecated.
`boolean`	`process()` Deprecated.
`void`	`setCustomOutOfBoundsStrategy(OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)` Deprecated.
`boolean`	`setExtendedOriginalImageSize(int[] inputSize)` Deprecated.
`void`	`setFFTOptimization(FourierTransform.FFTOptimization fftOptimization)` Deprecated.
`void`	`setImageExtension(int[] imageExtension)` Deprecated.
`void`	`setMinExtension(int minExtension)` Deprecated.
`void`	`setNumThreads()` Deprecated. Sets the number of threads to the amount of processors available
`void`	`setNumThreads(int numThreads)` Deprecated. Sets the number of threads
`void`	`setPreProcessing(FourierTransform.PreProcessing preProcessing)` Deprecated.
`void`	`setRearrangement(FourierTransform.Rearrangement rearrangement)` Deprecated.
`void`	`setRelativeFadeOutDistance(float relativeFadeOutDistance)` Deprecated.
`void`	`setRelativeImageExtension(float extensionRatio)` Deprecated.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType,
                        FourierTransform.PreProcessing preProcessing,
                        FourierTransform.Rearrangement rearrangement,
                        FourierTransform.FFTOptimization fftOptimization,
                        float relativeImageExtension,
                        float relativeFadeOutDistance,
                        int minExtension)

Deprecated.

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType)

Deprecated.

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType,
                        FourierTransform.Rearrangement rearrangement)

Deprecated.

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType,
                        FourierTransform.FFTOptimization fftOptimization)

Deprecated.

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType,
                        FourierTransform.PreProcessing preProcessing)

Deprecated.

FourierTransform

public FourierTransform(Img<T> input,
                        S complexType)
                 throws IncompatibleTypeException

Deprecated.

Throws:: IncompatibleTypeException

FourierTransform

public FourierTransform(Img<T> input,
                        S complexType,
                        FourierTransform.Rearrangement rearrangement)
                 throws IncompatibleTypeException

Deprecated.

Throws:: IncompatibleTypeException

FourierTransform

public FourierTransform(Img<T> input,
                        S complexType,
                        FourierTransform.PreProcessing preProcessing)
                 throws IncompatibleTypeException

Deprecated.

Throws:: IncompatibleTypeException

FourierTransform

public FourierTransform(Img<T> input,
                        S complexType,
                        FourierTransform.FFTOptimization fftOptimization)
                 throws IncompatibleTypeException

Deprecated.

Throws:: IncompatibleTypeException

FourierTransform

public FourierTransform(Img<T> input,
                        S complexType,
                        OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)
                 throws IncompatibleTypeException

Deprecated.

Throws:: IncompatibleTypeException

FourierTransform

public FourierTransform(RandomAccessibleInterval<T> input,
                        ImgFactory<S> imgFactory,
                        S complexType,
                        OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)

Deprecated.

Method Detail

setPreProcessing

public void setPreProcessing(FourierTransform.PreProcessing preProcessing)

Deprecated.

setCustomOutOfBoundsStrategy

public void setCustomOutOfBoundsStrategy(OutOfBoundsFactory<T,RandomAccessibleInterval<T>> outOfBounds)

Deprecated.

setRearrangement

public void setRearrangement(FourierTransform.Rearrangement rearrangement)

Deprecated.

setFFTOptimization

public void setFFTOptimization(FourierTransform.FFTOptimization fftOptimization)

Deprecated.

setRelativeFadeOutDistance

public void setRelativeFadeOutDistance(float relativeFadeOutDistance)

Deprecated.

setMinExtension

public void setMinExtension(int minExtension)

Deprecated.

setImageExtension

public void setImageExtension(int[] imageExtension)

Deprecated.

setExtendedOriginalImageSize

public boolean setExtendedOriginalImageSize(int[] inputSize)

Deprecated.

setRelativeImageExtension

public void setRelativeImageExtension(float extensionRatio)

Deprecated.

getImageType
```
public T getImageType()
```
Deprecated.

getExtendedSize
```
public int[] getExtendedSize()
```
Deprecated.

getPreProcessing

public FourierTransform.PreProcessing getPreProcessing()

Deprecated.

getRearrangement

public FourierTransform.Rearrangement getRearrangement()

Deprecated.

getFFOptimization

public FourierTransform.FFTOptimization getFFOptimization()

Deprecated.

getRelativeImageExtension

public float getRelativeImageExtension()

Deprecated.

getImageExtension
```
public int[] getImageExtension()
```
Deprecated.

getRelativeFadeOutDistance

public float getRelativeFadeOutDistance()

Deprecated.

getCustomOutOfBoundsStrategy

public OutOfBoundsFactory<T,RandomAccessibleInterval<T>> getCustomOutOfBoundsStrategy()

Deprecated.

getMinExtension
```
public int getMinExtension()
```
Deprecated.

getOriginalSize
```
public int[] getOriginalSize()
```
Deprecated.

getOriginalOffset
```
public int[] getOriginalOffset()
```
Deprecated.

getFFTInputOffset
```
public int[] getFFTInputOffset()
```
Deprecated.

getFFTInputSize
```
public int[] getFFTInputSize()
```
Deprecated.

process
```
public boolean process()
```
Deprecated.

Specified by:

process in interface Algorithm

getExtendedImageSize

protected int[] getExtendedImageSize(RandomAccessibleInterval<?> input,
                                     int[] imageExtension)

Deprecated.

getZeroPaddingSize

protected int[] getZeroPaddingSize(int[] imageSize,
                                   FourierTransform.FFTOptimization fftOptimization)

Deprecated.

getProcessingTime
```
public long getProcessingTime()
```
Deprecated.

Specified by:

getProcessingTime in interface Benchmark

setNumThreads
```
public void setNumThreads()
```
Deprecated.

Description copied from interface: MultiThreaded

Sets the number of threads to the amount of processors available

Specified by:

setNumThreads in interface MultiThreaded

setNumThreads
```
public void setNumThreads(int numThreads)
```
Deprecated.

Description copied from interface: MultiThreaded

Sets the number of threads

Specified by:

setNumThreads in interface MultiThreaded

Parameters:

numThreads - - number of threads to use

getNumThreads
```
public int getNumThreads()
```
Deprecated.

Description copied from interface: MultiThreaded

The number of threads used by the algorithm

Specified by:

getNumThreads in interface MultiThreaded

Returns:

- the number of threads

getResult
```
public Img<S> getResult()
```
Deprecated.

Specified by:

getResult in interface OutputAlgorithm<Img<S extends ComplexType<S>>>

checkInput
```
public boolean checkInput()
```
Deprecated.

Specified by:

checkInput in interface Algorithm

getErrorMessage
```
public String getErrorMessage()
```
Deprecated.

Specified by:

getErrorMessage in interface Algorithm

Class FourierTransform<T extends RealType<T>,S extends ComplexType<S>>

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

FourierTransform

Method Detail

setPreProcessing

setCustomOutOfBoundsStrategy

setRearrangement

setFFTOptimization

setRelativeFadeOutDistance

setMinExtension

setImageExtension

setExtendedOriginalImageSize

setRelativeImageExtension

getImageType

getExtendedSize

getPreProcessing

getRearrangement

getFFOptimization

getRelativeImageExtension

getImageExtension

getRelativeFadeOutDistance

getCustomOutOfBoundsStrategy

getMinExtension

getOriginalSize

getOriginalOffset

getFFTInputOffset

getFFTInputSize

process

getExtendedImageSize

getZeroPaddingSize

getProcessingTime

setNumThreads

setNumThreads

getNumThreads

getResult

checkInput

getErrorMessage