Package | Description |
---|---|
de.unihalle.informatik.Alida.dataconverter | |
de.unihalle.informatik.Alida.demo |
Demonstrator package of how to implement and use Alida operators.
|
de.unihalle.informatik.Alida.operator |
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
|
Modifier and Type | Field and Description |
---|---|
(package private) Object |
ALDNumberConverter.sourceObject |
(package private) Object |
ALDVectorNativeArrayConverter.sourceObject |
(package private) Class<?> |
ALDNumberConverter.targetClass |
(package private) Class<?> |
ALDVectorNativeArrayConverter.targetClass |
(package private) Object |
ALDNumberConverter.targetObject |
(package private) Object |
ALDVectorNativeArrayConverter.targetObject |
Modifier and Type | Field and Description |
---|---|
private Integer[][] |
ALDParameterTester.array_Intege_2D |
private Integer[] |
ALDParameterTester.array_Integer |
private String[] |
ALDParameterTester.array_String |
private String[][] |
ALDParameterTester.array_String_2D |
protected Baseline1D |
CorrectForBaseline1D.baseline
The baseline detected
|
protected Baseline1D |
DetectBaseline1D.baseline
The baseline detected
|
protected Extrema1D |
CorrectForBaseline1D.correctedExtrema
Corrected extrema
|
protected Extrema1D |
DemoWorkflow1D.correctedExtrema
Corrected extrema
|
protected Double[] |
ALDSummarizeArrayOp.data
Input 1D array
|
private int[][] |
ALDTransposeMatrix.data
Input data array.
|
private Double[] |
ALDCalcMeanArray.data
Input data array.
|
private Boolean |
ALDCalcMeanArray.doMeanFree
Compute mean free data
|
private long |
ApplyToMatrix.elapsedTime
Elpased time
|
(package private) Integer |
RefineLocalExtrema1D.epsilon
Size of neighborhood is
2*epsilon+1 |
private EnumSet<ALDParameterTester.EnumSelection> |
ALDParameterTester.eSelect |
protected ExperimentalData1D |
WriteExperimentalData1D.experiment
1D Experiment
|
protected ExperimentalData1D |
ReadExperimentalData1D.experiment
1D Experiment
|
protected ExperimentalData1D |
DetectLocalExtrema1D.experiment
1D Experiment
|
protected ExperimentalData1D |
DetectBaseline1D.experiment
1D Experiment
|
protected ExperimentalData1D |
SmoothData1D.experiment
1D Experiment
|
protected ExperimentalData1D |
DemoWorkflow1D.experiment
1D Experiment
|
protected Extrema1D |
CorrectForBaseline1D.extrema
Extrema
|
protected Extrema1D |
RefineLocalExtrema1D.extrema
Extrema of un-smoothed data
|
protected Extrema1D |
DetectLocalExtrema1D.extrema
Local extrema detected
|
protected Extrema1D |
WriteExtrema1D.extrema
1D Experiment
|
protected Extrema1D |
RefineLocalExtrema1D.extremaSmoothedData
Extrema detected in smoothed data
|
(package private) DetectLocalExtrema1D.ExtremaType |
DetectLocalExtrema1D.extremaType
Type of extrema
|
(package private) ALDFileString |
WriteExperimentalData1D.filename
Filename
|
(package private) ALDFileString |
ReadExperimentalData1D.filename
Filename
|
(package private) ALDFileString |
WriteExtrema1D.filename
Filename
|
private float |
ALDDynamicOp.floatIn |
private float |
ALDDynamicOpExtended.floatIn |
private String |
ALDDynamicOp.info |
private String |
ALDDynamicOpExtended.info |
private String |
ALDParameterTester.infoString |
private String |
ALDDynamicOp.infoText |
private String |
ALDDynamicOpExtended.infoText |
private int |
ALDDynamicOp.intIn |
private int |
ALDDynamicOpExtended.intIn |
private Double[][] |
MatrixSum.matrix
Input matrix
|
private Double[][] |
ApplyToMatrix.matrix
Input matrix
|
private Double |
ALDCalcMeanArray.mean
Calculated average value.
|
private Double[] |
ALDCalcMeanArray.meanFreeData
Mean free data
|
private boolean |
ALDDynamicOpExtended.modParameter1 |
private boolean |
ALDDynamicOpExtended.modParameter2 |
private boolean |
ALDDynamicOpExtended.modParameter3 |
private Integer[] |
ALDParameterTester.out_array_Integer |
private String[] |
ALDParameterTester.out_array_String |
private Boolean |
ALDParameterTester.out_Boolean |
private Byte |
ALDParameterTester.out_Byte |
private double |
ALDParameterTester.out_double |
private Double |
ALDParameterTester.out_Double |
private Float |
ALDParameterTester.out_Float |
private Integer |
ALDParameterTester.out_Integer |
private Long |
ALDParameterTester.out_Long |
private Short |
ALDParameterTester.out_Short |
private Vector<Byte> |
ALDParameterTester.out_vectorByte |
private Vector<Double> |
ALDParameterTester.out_vectorDouble |
private EnumSet<ALDParameterTester.EnumSelection> |
ALDParameterTester.outSelect |
private boolean |
ALDParameterTester.param_boolean |
private Boolean |
ALDParameterTester.param_Boolean |
private byte |
ALDParameterTester.param_byte |
private Byte |
ALDParameterTester.param_Byte |
private ALDDirectoryString |
ALDParameterTester.param_dir |
private double |
ALDParameterTester.param_double |
private Double |
ALDParameterTester.param_Double |
private ALDParameterTester.EnumSelection |
ALDParameterTester.param_enum |
private ALDFileString |
ALDParameterTester.param_file |
private float |
ALDParameterTester.param_float |
private Float |
ALDParameterTester.param_Float |
private int |
ALDParameterTester.param_int |
private Integer |
ALDParameterTester.param_Integer |
private long |
ALDParameterTester.param_long |
private Long |
ALDParameterTester.param_Long |
private short |
ALDParameterTester.param_short |
private Short |
ALDParameterTester.param_Short |
private String |
ALDParameterTester.param_String |
private Vector<Byte> |
ALDParameterTester.param_vectorByte |
private Vector<Double> |
ALDParameterTester.param_vectorDouble |
protected Extrema1D |
RefineLocalExtrema1D.refinedExtrema
Refined positions of the extrema detected in smoothed data
|
private String |
ALDDynamicOp.result |
private String |
ALDDynamicOpExtended.result |
private boolean |
ApplyToMatrix.returnElapsedTime
Supplemental to request elapsed time to be returned
|
(package private) Float |
SmoothData1D.sigma
Standard deviation of Gaussian
|
protected ExperimentalData1D |
SmoothData1D.smoothedExperiment
Smoothed 1D Experiment
|
protected ExperimentalData1D |
DemoWorkflow1D.smoothedExperiment
Smoothed 1D Experiment
|
(package private) SmoothData1D.SmoothingMethod |
SmoothData1D.smoothingMethod
Smoothing method
|
private Double[] |
ApplyToMatrix.summaries
1D Array of summaries.
|
private MatrixSum.SummarizeMode |
MatrixSum.summarizeMode
Mode of summarizing
|
private ApplyToMatrix.SummarizeMode |
ApplyToMatrix.summarizeMode
Mode of summarizing
|
private ALDSummarizeArrayOp |
ApplyToMatrix.summarizeOp
Summarizing opererator
|
protected Double |
ALDSummarizeArrayOp.summary
Summarizing scalar
|
private Double[] |
MatrixSum.sums
1D Array of sums.
|
private int[][] |
ALDTransposeMatrix.tdata
Output data array.
|
private boolean |
ALDDynamicOp.useRealData |
private boolean |
ALDDynamicOpExtended.useRealData |
private boolean |
ALDDynamicOpExtended.verbose |
(package private) Integer |
SmoothData1D.width
Window width
|
Modifier and Type | Field and Description |
---|---|
protected Boolean |
ALDOperator.verbose
Verbose flag to be inherited by all operators.
|
Copyright © 2010–2021 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.